Plant Genomics

Biography

Biography: Ayyanagouda Patil

Abstract

Heat stress is a one of the major abiotic stresses which has profound impact on pollen viability and silk receptivity intern affect maize yields. Heat stable lines can be identified based on pollen viability and silk receptivity under high temperature condition. The present study is first of its kind to conduct genome wide association study for identification of genomic loci associated with pollen viability and silk receptivity under heat stress in tropical maize using genotyping by sequence data (GBS) with 239,594 SNP markers (MAF≥0.05) used for marker trait association in a panel of maize inbred lines. The pollen viability and silk receptivity of the inbred lines was assessed based on seed set percent. Association analysis was conducted using a mixed linear model involving both population structure and kinship to control false positives. The average physical distance between pairs of markers was 27.7 kb with mean LD estimation (r2) of 0.36 across genome and LD decay of 6.34 kb at r2=0.2. Out of 239,594 SNPs, 44 SNPs were significantly (P≤0.0001) associated with pollen viability and 69 SNPs were significantly associated with silk receptivity under heat stress. Candidate gene based analysis was used to predict the putative function of the associated genes. Of the many SNP makers, the gene associated with SNP marker (S6_156252525) is homologue of rice Osg1 gene which code for β-1,3-glucanases associated with pollen fertility. The SNP (S10_120824169) for silk receptivity was associated with protein phosphatase 2C, which has an important role in phosphorylation/dephosphorylation of heat shock proteins, possibly promoting the silk to survive under high temperatures. The SNP marker S3_220855063 was found to be associated with hydroxyproline-rich glycoproteins, which plays an important role pollen tube and silk growth. These SNP markers linked to the functionality of silk and pollen may be the ideal candidate for developing heat tolerant hybrids.